OBO Foundry dashboard analysis¶

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/tmp/ipykernel_26508/4293058459.py:21: FutureWarning:

The `inplace` parameter in pandas.Categorical.reorder_categories is deprecated and will be removed in a future version. Reordering categories will always return a new Categorical object.

Ontologies by number of axioms

Ontologies by number of classes

Ontologies by how many ontologies use it

Different serialisations used

RDF/XML Syntax    181
OWL/XML Syntax      2
RDF/XML             2
Name: syntax, dtype: int64

Breakdown of used Axiom Types

count mean std min 25% 50% 75% max
AnnotationAssertion 185 152122.594595 808920.361317 52.0 1515.0 7116.0 31709.0 10002840.0
Declaration 185 28791.291892 188511.864651 5.0 475.0 1245.0 5333.0 2446701.0
SubClassOf 180 38725.313514 215102.336944 0.0 350.0 1370.0 6806.0 2446672.0
EquivalentClasses 129 2672.713514 13539.751602 0.0 0.0 25.0 222.0 126605.0
SubAnnotationPropertyOf 119 9.270270 20.327547 0.0 0.0 2.0 8.0 164.0
TransitiveObjectProperty 115 6.227027 11.184827 0.0 0.0 2.0 6.0 69.0
SubObjectPropertyOf 103 42.021622 97.963389 0.0 0.0 2.0 37.0 681.0
DisjointClasses 96 30.583784 100.992815 0.0 0.0 1.0 21.0 844.0
ObjectPropertyDomain 86 14.805405 27.614878 0.0 0.0 0.0 18.0 148.0
ObjectPropertyRange 86 14.583784 26.849515 0.0 0.0 0.0 19.0 142.0
InverseObjectProperties 82 9.162162 17.915735 0.0 0.0 0.0 12.0 113.0
SubPropertyChainOf 66 9.908108 26.854625 0.0 0.0 0.0 2.0 149.0
ClassAssertion 64 84.200000 493.557349 0.0 0.0 0.0 18.0 5528.0
FunctionalObjectProperty 49 0.816216 1.696786 0.0 0.0 0.0 1.0 9.0
SymmetricObjectProperty 49 1.664865 8.476060 0.0 0.0 0.0 1.0 81.0
DataPropertyRange 44 1.102703 3.126890 0.0 0.0 0.0 0.0 30.0
DataPropertyDomain 39 1.043243 3.141287 0.0 0.0 0.0 0.0 32.0
IrrefexiveObjectProperty 37 0.470270 1.351502 0.0 0.0 0.0 0.0 9.0
DifferentIndividuals 35 0.810811 6.052478 0.0 0.0 0.0 0.0 82.0
AnnotationPropertyRangeOf 35 1.421622 10.529749 0.0 0.0 0.0 0.0 139.0
EquivalentObjectProperties 30 1.437838 5.468057 0.0 0.0 0.0 0.0 36.0
SubDataPropertyOf 30 0.843243 3.574102 0.0 0.0 0.0 0.0 33.0
InverseFunctionalObjectProperty 26 0.183784 0.530337 0.0 0.0 0.0 0.0 4.0
Rule 25 1.962162 6.223524 0.0 0.0 0.0 0.0 31.0
FunctionalDataProperty 25 0.486486 1.521970 0.0 0.0 0.0 0.0 11.0
AsymmetricObjectProperty 20 0.367568 1.646811 0.0 0.0 0.0 0.0 18.0
DisjointObjectProperties 15 0.232432 1.139712 0.0 0.0 0.0 0.0 10.0
ObjectPropertyAssertion 14 12.443243 101.414819 0.0 0.0 0.0 0.0 1024.0
ReflexiveObjectProperty 12 0.113514 0.503338 0.0 0.0 0.0 0.0 4.0
AnnotationPropertyDomain 10 0.264865 1.611814 0.0 0.0 0.0 0.0 17.0
DisjointUnion 7 0.086486 0.554704 0.0 0.0 0.0 0.0 5.0
DataPropertyAssertion 5 0.178378 1.596725 0.0 0.0 0.0 0.0 20.0
DatatypeDefinition 2 0.108108 1.398442 0.0 0.0 0.0 0.0 19.0

Breakdown of used OWL Class Expression constructs

count mean std min 25% 50% 75% max
Class 184 118311.097297 632832.007932 0.0 1510.0 5706.0 21682.0 7340018.0
ObjectSomeValuesFrom 163 17379.686486 87814.086881 0.0 32.0 445.0 2982.0 869538.0
ObjectIntersectionOf 123 4143.405405 20158.049605 0.0 0.0 32.0 477.0 202450.0
ObjectUnionOf 89 26.237838 82.469544 0.0 0.0 0.0 16.0 767.0
ObjectAllValuesFrom 74 31.605405 153.211601 0.0 0.0 0.0 9.0 1764.0
ObjectComplementOf 63 14.351351 87.941500 0.0 0.0 0.0 2.0 1112.0
ObjectMinCardinality 62 2.459459 8.185999 0.0 0.0 0.0 1.0 57.0
ObjectExactCardinality 48 9.778378 88.271318 0.0 0.0 0.0 1.0 1193.0
ObjectOneOf 46 3.697297 28.321240 0.0 0.0 0.0 0.0 275.0
DataMinCardinality 27 0.254054 0.695715 0.0 0.0 0.0 0.0 4.0
DataExactCardinality 23 0.545946 1.641612 0.0 0.0 0.0 0.0 7.0
DataSomeValuesFrom 23 6.891892 64.107579 0.0 0.0 0.0 0.0 859.0
ObjectHasValue 21 223.664865 1921.586034 0.0 0.0 0.0 0.0 21288.0
ObjectMaxCardinality 19 0.805405 4.475170 0.0 0.0 0.0 0.0 41.0
DataHasValue 17 118.913514 1564.984988 0.0 0.0 0.0 0.0 21288.0
ObjectHasSelf 17 0.232432 0.958388 0.0 0.0 0.0 0.0 6.0
DataAllValuesFrom 3 0.102703 1.024294 0.0 0.0 0.0 0.0 13.0
DataMaxCardinality 2 0.010811 0.103692 0.0 0.0 0.0 0.0 1.0

OBO Score (Experimental)

ontology score score_dash score_impact
120 omo 0.964 0.956 0.973
150 ro 0.797 0.844 0.751
8 bfo 0.786 0.778 0.795
132 pato 0.713 0.956 0.470
64 go 0.704 0.904 0.503
110 obi 0.685 0.949 0.422
20 cl 0.620 0.949 0.292
102 ncbitaxon 0.609 0.822 0.395
167 uberon 0.587 0.800 0.373
44 envo 0.563 0.942 0.184
144 pr 0.548 0.853 0.243
35 doid 0.539 0.949 0.130
14 chebi 0.531 0.631 0.432
94 mondo 0.499 0.949 0.049
69 hp 0.498 0.867 0.130
139 plana 0.494 0.978 0.011
175 wbls 0.494 0.978 0.011
176 wbphenotype 0.494 0.978 0.011
113 ogms 0.485 0.727 0.243
40 eco 0.477 0.949 0.005
164 trans 0.477 0.927 0.027
36 dpo 0.474 0.949 0.000
128 opl 0.472 0.927 0.016
96 mp 0.469 0.889 0.049
63 gno 0.466 0.927 0.005
160 symp 0.466 0.882 0.049
122 omrse 0.465 0.838 0.092
42 ecto 0.464 0.911 0.016
111 obib 0.463 0.898 0.027
108 oba 0.461 0.889 0.032
2 aism 0.460 0.904 0.016
46 eupath 0.453 0.889 0.016
134 pco 0.451 0.793 0.108
52 fbdv 0.449 0.882 0.016
138 phipo 0.447 0.882 0.011
170 vbo 0.445 0.889 0.000
26 colao 0.445 0.889 0.000
133 pcl 0.445 0.889 0.000
182 zfa 0.442 0.867 0.016
50 fbbt 0.442 0.867 0.016
11 caro 0.442 0.667 0.216
73 iao 0.441 0.882 0.000
51 fbcv 0.441 0.860 0.022
80 lepao 0.441 0.882 0.000
99 mro 0.441 0.882 0.000
32 ddpheno 0.436 0.867 0.005
174 wbbt 0.435 0.860 0.011
17 chmo 0.435 0.816 0.054
53 fideo 0.433 0.867 0.000
173 vto 0.433 0.867 0.000
125 ontoavida 0.430 0.860 0.000
37 dron 0.428 0.771 0.086
184 zp 0.427 0.844 0.011
41 ecocore 0.427 0.844 0.011
25 cob 0.422 0.822 0.022
95 mop 0.421 0.816 0.027
152 rxno 0.421 0.838 0.005
66 hancestro 0.416 0.816 0.016
140 planp 0.413 0.822 0.005
1 agro 0.413 0.822 0.005
9 bspo 0.412 0.727 0.097
181 zeco 0.411 0.822 0.000
59 gecko 0.410 0.816 0.005
161 t4fs 0.408 0.816 0.000
180 xpo 0.403 0.800 0.005
13 cdno 0.400 0.800 0.000
141 po 0.397 0.698 0.097
7 bco 0.396 0.787 0.005
117 ohpi 0.394 0.787 0.000
75 ico 0.394 0.749 0.038
38 duo 0.390 0.764 0.016
163 to 0.388 0.771 0.005
149 rbo 0.388 0.771 0.005
101 nbo 0.386 0.653 0.119
146 psdo 0.382 0.764 0.000
47 exo 0.380 0.733 0.027
56 foodon 0.373 0.660 0.086
61 geno 0.371 0.727 0.016
58 fypo 0.369 0.733 0.005
70 hsapdv 0.369 0.711 0.027
76 ido 0.367 0.616 0.119
159 swo 0.366 0.727 0.005
45 epio 0.363 0.727 0.000
0 ado 0.363 0.727 0.000
57 fovt 0.363 0.727 0.000
177 xao 0.363 0.711 0.016
145 proco 0.363 0.727 0.000
21 clao 0.360 0.720 0.000
103 ncit 0.358 0.593 0.124
127 oostt 0.357 0.704 0.011
39 ecao 0.355 0.711 0.000
136 pdumdv 0.355 0.711 0.000
43 emapa 0.354 0.704 0.005
158 stato 0.354 0.622 0.086
178 xco 0.349 0.682 0.016
116 ohmi 0.347 0.689 0.005
5 apollo_sv 0.345 0.593 0.097
118 olatdv 0.344 0.689 0.000
34 disdriv 0.344 0.689 0.000
92 mmusdv 0.344 0.689 0.000
130 ornaseq 0.344 0.689 0.000
27 cro 0.344 0.689 0.000
10 bto 0.343 0.653 0.032
168 uo 0.340 0.511 0.168
135 pdro 0.338 0.653 0.022
169 upheno 0.335 0.638 0.032
60 genepio 0.335 0.638 0.032
78 kisao 0.334 0.667 0.000
15 cheminf 0.334 0.667 0.000
68 hom 0.334 0.667 0.000
19 cio 0.334 0.667 0.000
16 chiro 0.334 0.667 0.000
4 apo 0.334 0.667 0.000
48 fao 0.330 0.644 0.016
3 amphx 0.330 0.660 0.000
154 scdo 0.329 0.653 0.005
162 taxrank 0.328 0.644 0.011
79 labo 0.327 0.653 0.000
143 ppo 0.327 0.653 0.000
98 mpio 0.325 0.644 0.005
81 ma 0.322 0.644 0.000
28 cteno 0.322 0.644 0.000
71 hso 0.319 0.638 0.000
156 so 0.319 0.460 0.178
31 ddanat 0.317 0.622 0.011
129 opmi 0.316 0.593 0.038
91 mmo 0.316 0.616 0.016
12 cdao 0.314 0.622 0.005
30 cvdo 0.314 0.616 0.011
183 zfs 0.314 0.622 0.005
109 obcs 0.310 0.593 0.027
84 mf 0.308 0.578 0.038
89 miapa 0.308 0.616 0.000
49 fbbi 0.308 0.616 0.000
55 fobi 0.308 0.616 0.000
62 geo 0.307 0.571 0.043
82 maxo 0.307 0.593 0.022
112 ogg 0.302 0.549 0.054
153 sbo 0.302 0.600 0.005
107 oarcs 0.300 0.600 0.000
97 mpath 0.300 0.556 0.043
106 oae 0.298 0.504 0.092
67 hao 0.296 0.593 0.000
142 poro 0.296 0.593 0.000
115 ohd 0.296 0.593 0.000
179 xlmod 0.296 0.593 0.000
148 pw 0.290 0.564 0.016
23 clyh 0.289 0.578 0.000
83 mco 0.289 0.578 0.000
29 cto 0.288 0.571 0.005
166 txpo 0.288 0.571 0.005
54 flopo 0.288 0.571 0.005
119 omit 0.285 0.542 0.027
151 rs 0.284 0.564 0.005
147 pso 0.278 0.556 0.000
86 mfoem 0.277 0.549 0.005
65 gsso 0.275 0.527 0.022
137 peco 0.272 0.511 0.032
24 cmo 0.272 0.489 0.054
87 mfomd 0.267 0.511 0.022
100 ms 0.266 0.520 0.011
126 ontoneo 0.260 0.520 0.000
104 ncro 0.258 0.504 0.011
165 tto 0.256 0.511 0.000
124 ons 0.256 0.489 0.022
105 nomen 0.252 0.504 0.000
88 mi 0.245 0.467 0.022
6 aro 0.245 0.467 0.022
121 omp 0.245 0.467 0.022
172 vt 0.242 0.467 0.016
77 ino 0.241 0.460 0.022
18 cido 0.239 0.467 0.011
171 vo 0.237 0.393 0.081
155 sepio 0.236 0.467 0.005
85 mfmo 0.234 0.467 0.000
123 one 0.230 0.460 0.000
74 iceo 0.230 0.460 0.000
72 htn 0.230 0.460 0.000
93 mod 0.227 0.438 0.016
33 dideo 0.222 0.438 0.005
157 spd 0.219 0.438 0.000
22 clo 0.202 0.333 0.070
131 ovae 0.197 0.393 0.000
114 ogsf 0.197 0.393 0.000
90 micro 0.192 0.378 0.005

OBO Score Summary

count mean std min 25% 50% 75% max
score 185.0 0.374422 0.113799 0.192 0.302 0.354 0.435 0.964
score_dash 185.0 0.695173 0.155897 0.333 0.593 0.689 0.822 0.978
score_impact 185.0 0.053611 0.133978 0.000 0.000 0.011 0.032 0.973

OBO dependency graph